STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_08720COG2380 Uncharacterized protein conserved in bacteria. (325 aa)    
Predicted Functional Partners:
RAM_08705
Hypothetical protein; COG0433 Predicted ATPase.
 
 
   0.974
RAM_08715
Exonuclease SbcC; COG0419 ATPase involved in DNA repair.
 
     0.949
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
     0.944
RAM_42640
ATPase; COG1618 Predicted nucleotide kinase.
 
 
   0.680
RAM_36330
Hypothetical protein; COG0433 Predicted ATPase.
   
   0.601
RAM_37885
Secreted esterase.
  
     0.601
RAM_20150
COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.530
RAM_29645
Hypothetical protein; COG2175 Probable taurine catabolism dioxygenase.
  
     0.485
RAM_44465
Erythromycin esterase; COG2945 Predicted hydrolase of the alpha/beta superfamily.
  
     0.485
RAM_21415
Hypothetical protein.
  
     0.464
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.