STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_08795Cysteine dioxygenase; COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily. (159 aa)    
Predicted Functional Partners:
RAM_47460
Hypothetical protein.
  
     0.574
RAM_08175
Rhodanese-like protein; COG0607 Rhodanese-related sulfurtransferase.
 
    0.560
RAM_46950
Hypothetical protein; COG0147 Anthranilate/para-aminobenzoate synthases component I.
  
     0.554
RAM_13110
Ribonuclease BN; COG1295 Predicted membrane protein.
  
     0.536
RAM_05165
Hypothetical protein.
  
     0.529
RAM_32205
Hypothetical protein.
  
     0.526
RAM_04090
Hypothetical protein.
  
     0.516
RAM_11305
Hypothetical protein.
  
     0.510
RAM_05680
Hypothetical protein.
  
     0.491
RAM_02505
Hypothetical protein.
  
     0.476
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.