STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_08820Oxidoreductase; COG4097 Predicted ferric reductase. (448 aa)    
Predicted Functional Partners:
RAM_08815
COG3976 Uncharacterized protein conserved in bacteria.
 
     0.951
ApbE
Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
     0.943
RAM_18780
COG3976 Uncharacterized protein conserved in bacteria.
 
     0.791
ApbE-2
Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
     0.769
RAM_08830
COG0642 Signal transduction histidine kinase.
 
     0.696
RAM_08805
Glyoxalase/bleomycin resistance protein/dioxygenase.
       0.600
AnsA
COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D.
       0.537
RAM_08825
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.536
RAM_01620
Lipoprotein; COG4315 Uncharacterized protein conserved in bacteria.
 
   
 0.438
RAM_12930
Lipoprotein; COG4315 Uncharacterized protein conserved in bacteria.
 
   
 0.428
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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