STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_08855COG1522 Transcriptional regulators. (77 aa)    
Predicted Functional Partners:
RAM_08850
Hypothetical protein.
       0.746
RAM_02335
Hypothetical protein.
  
     0.625
RAM_45415
COG0003 Oxyanion-translocating ATPase.
  
     0.621
RAM_45410
COG0003 Oxyanion-translocating ATPase.
  
     0.603
thiL
Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.577
SmtA
Methyltransferase; COG0500 SAM-dependent methyltransferases.
  
     0.574
RAM_38545
Sporulation and cell division protein SsgA; COG0571 dsRNA-specific ribonuclease.
  
     0.542
RAM_08865
COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
    0.540
RAM_12450
Cyclase/dehydrase.
  
     0.536
RAM_01885
Sporulation and cell division protein SsgA.
  
     0.521
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.