STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_08875COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily. (176 aa)    
Predicted Functional Partners:
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
       0.705
GalA-2
Alpha-galactosidase; COG0495 Leucyl-tRNA synthetase.
       0.528
RAM_08885
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
     
 0.523
RAM_11280
Carbonic anhydrase fused with sulfate permease; COG0659 Sulfate permease and related transporters (MFS superfamily).
   
 
 0.497
RAM_11285
Carbonic anhydrase fused with sulfate permease; COG0659 Sulfate permease and related transporters (MFS superfamily).
   
 
 0.497
CynT
COG0288 Carbonic anhydrase.
    
 
 0.431
CynT-2
COG0288 Carbonic anhydrase.
    
 
 0.431
RAM_46550
COG1011 Predicted hydrolase (HAD superfamily).
     
 0.424
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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