STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_08985RCC1 domain-containing protein; COG5184 Alpha-tubulin suppressor and related RCC1 domain-containing proteins. (298 aa)    
Predicted Functional Partners:
NuoM
COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M).
    
 
 0.790
RAM_27745
COG2365 Protein tyrosine/serine phosphatase.
   
 
 0.743
RAM_46445
COG2365 Protein tyrosine/serine phosphatase.
   
 
 0.743
RAM_34690
COG0631 Serine/threonine protein phosphatase.
 
 0.514
RAM_11315
ATP-dependent protease Lon; COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease.
  
 
  0.496
RAM_39810
Hypothetical protein.
   
 0.481
RAM_08585
Ankyrin repeat-containing protein; COG0666 FOG: Ankyrin repeat.
  
 0.477
RAM_00280
FHA domain-containing protein; COG1716 FOG: FHA domain.
 
 
  0.471
RAM_11280
Carbonic anhydrase fused with sulfate permease; COG0659 Sulfate permease and related transporters (MFS superfamily).
   
 
 0.467
RAM_11285
Carbonic anhydrase fused with sulfate permease; COG0659 Sulfate permease and related transporters (MFS superfamily).
   
 
 0.467
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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