STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_09100COG3599 Cell division initiation protein. (242 aa)    
Predicted Functional Partners:
RAM_09105
Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein.
     
 0.841
RAM_04410
Hypothetical protein.
  
   
 0.773
RAM_41560
Hypothetical protein.
  
     0.737
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
     
 0.729
RAM_05625
Hypothetical protein.
  
     0.720
RAM_03750
Hypothetical protein.
  
     0.713
RAM_43750
Hypothetical protein.
  
     0.707
RAM_02625
Hypothetical protein.
  
     0.704
RAM_39525
Hypothetical protein.
  
     0.696
RAM_43565
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.695
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.