Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| RAM_09105 | infC | RAM_09105 | RAM_31050 | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.887 |
| RAM_09105 | rnc | RAM_09105 | RAM_09115 | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.893 |
| RAM_09105 | rplA | RAM_09105 | RAM_03050 | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.900 |
| RAM_09105 | rplM | RAM_09105 | RAM_03705 | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.887 |
| RAM_09105 | rplU | RAM_09105 | RAM_34400 | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.888 |
| RAM_09105 | rpmB | RAM_09105 | RAM_08890 | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.932 |
| RAM_09105 | rpmF | RAM_09105 | RAM_09110 | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.985 |
| RAM_09105 | rpsB | RAM_09105 | RAM_10010 | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.890 |
| RAM_09105 | rpsC | RAM_09105 | RAM_03490 | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.940 |
| RAM_09105 | rpsF | RAM_09105 | RAM_47670 | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.904 |
| infC | RAM_09105 | RAM_31050 | RAM_09105 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | 0.887 |
| infC | rplA | RAM_31050 | RAM_03050 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.967 |
| infC | rplM | RAM_31050 | RAM_03705 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.977 |
| infC | rplU | RAM_31050 | RAM_34400 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.957 |
| infC | rpmB | RAM_31050 | RAM_08890 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.685 |
| infC | rpmF | RAM_31050 | RAM_09110 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.914 |
| infC | rpsB | RAM_31050 | RAM_10010 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.991 |
| infC | rpsC | RAM_31050 | RAM_03490 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.986 |
| infC | rpsF | RAM_31050 | RAM_47670 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.966 |
| rnc | RAM_09105 | RAM_09115 | RAM_09105 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. | 0.893 |
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