STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_09145COG3386 Gluconolactonase. (300 aa)    
Predicted Functional Partners:
RAM_19920
COG3386 Gluconolactonase.
  
  
 
0.925
GntK
Gluconokinase; COG3265 Gluconate kinase.
    
 0.908
Gdh
COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
  
 
 0.906
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
     
  0.800
AraA
Putative L-arabinose isomerase protein; Catalyzes the conversion of L-arabinose to L-ribulose.
     
  0.800
RAM_09155
Hypothetical protein.
  
    0.599
PadR
Transcriptional regulator, PadR-like family; COG1695 Predicted transcriptional regulators.
       0.546
IlvD
COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
 
   
 0.421
RAM_09160
Hydrolase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
    0.402
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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