STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_09155Hypothetical protein. (408 aa)    
Predicted Functional Partners:
PadR
Transcriptional regulator, PadR-like family; COG1695 Predicted transcriptional regulators.
 
    0.918
RAM_09145
COG3386 Gluconolactonase.
  
    0.592
RAM_00095
COG1396 Predicted transcriptional regulators.
  
     0.573
RAM_07550
LuxR family transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins.
  
     0.569
RAM_09160
Hydrolase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.558
RAM_44150
Hypothetical protein.
 
     0.557
RAM_39495
Hypothetical protein.
  
     0.556
RAM_45880
Hypothetical protein.
  
     0.544
RAM_39185
TPR repeat-containing protein; COG0457 FOG: TPR repeat.
  
     0.516
RAM_32125
Hypothetical protein.
  
     0.512
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.