STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PdhR-3COG2186 Transcriptional regulators. (239 aa)    
Predicted Functional Partners:
RAM_07680
COG2186 Transcriptional regulators.
  
     0.646
GlnA4-1
Glutamine synthetase-like protein; COG0174 Glutamine synthetase.
 
  
 0.640
RAM_40380
COG1802 Transcriptional regulators.
 
  
 0.638
RAM_36635
COG1802 Transcriptional regulators.
 
  
 0.637
RAM_09185
Short chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
    0.613
RAM_43035
COG1802 Transcriptional regulators.
 
  
 0.604
RAM_10935
COG1802 Transcriptional regulators.
 
  
 0.600
RAM_37305
COG1802 Transcriptional regulators.
 
  
 0.589
RAM_46035
COG1802 Transcriptional regulators.
 
  
 0.577
RAM_31060
COG1802 Transcriptional regulators.
 
  
 0.573
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.