STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_09255Peptidoglycan glycosyl transferase; COG0744 Membrane carboxypeptidase (penicillin-binding protein). (130 aa)    
Predicted Functional Partners:
RAM_00265
Peptidoglycan glycosyl transferase; COG0768 Cell division protein FtsI/penicillin-binding protein 2.
   
 0.704
FtsI
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
   
 0.694
DacB
COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4).
     
 0.653
RAM_15050
COG3599 Cell division initiation protein.
   
 
 0.620
RAM_09250
Glycosyl transferase family 51; COG0744 Membrane carboxypeptidase (penicillin-binding protein).
 
     0.609
RAM_09100
COG3599 Cell division initiation protein.
 
 
 
 0.572
htpX
COG0501 Zn-dependent protease with chaperone function; Belongs to the peptidase M48B family.
  
    0.520
RAM_15075
Penicillin-binding protein, transpeptidase; COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
 
 
 0.497
RAM_05375
Hypothetical protein.
   
 
 0.436
RAM_42330
COG3599 Cell division initiation protein.
   
 
 0.436
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.