STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PdhR-4COG2186 Transcriptional regulators. (248 aa)    
Predicted Functional Partners:
RAM_36635
COG1802 Transcriptional regulators.
 
  
 0.725
RAM_17255
COG1802 Transcriptional regulators.
 
  
 0.704
RAM_07680
COG2186 Transcriptional regulators.
  
     0.699
RAM_31060
COG1802 Transcriptional regulators.
 
  
 0.698
VanR
COG1802 Transcriptional regulators.
 
  
 0.689
RAM_37305
COG1802 Transcriptional regulators.
 
  
 0.688
RAM_09345
Oxidoreductase; COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
 
    0.678
RAM_10935
COG1802 Transcriptional regulators.
 
  
 0.667
RAM_09350
Amidohydrolase; COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
     0.618
RAM_40380
COG1802 Transcriptional regulators.
 
  
 0.597
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.