STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_09380Iron-sulfur cluster biosynthesis protein; Belongs to the HesB/IscA family. (97 aa)    
Predicted Functional Partners:
NifU
Nitrogen fixation protein NifU; COG0822 NifU homolog involved in Fe-S cluster formation.
  
 
 0.854
IscS
COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
  
 
 0.773
RAM_46265
Glycine cleavage T protein; COG0354 Predicted aminomethyltransferase related to GcvT; Belongs to the GcvT family.
  
 
 0.732
RAM_19255
Thioredoxin-like protein.
  
 
 0.611
RAM_19315
COG0694 Thioredoxin-like proteins and domains.
  
 
 0.611
RAM_09375
Hypothetical protein.
  
    0.574
SufC
COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
  
 
 0.567
AscD
COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
  
 0.557
RAM_19825
Phthalate 4,5-dioxygenase; COG2258 Uncharacterized protein conserved in bacteria.
  
 0.539
PaaE
Phenylacetic acid degradation oxidoreductase; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 0.532
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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