STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_09400COG1940 Transcriptional regulator/sugar kinase. (371 aa)    
Predicted Functional Partners:
RAM_09415
COG0395 ABC-type sugar transport system, permease component.
     
 0.724
RAM_09405
COG1653 ABC-type sugar transport system, periplasmic component.
  
    0.720
RAM_09410
COG1175 ABC-type sugar transport systems, permease components.
       0.719
GalA-3
COG3345 Alpha-galactosidase.
     
 0.547
GlxK
COG1929 Glycerate kinase; Belongs to the glycerate kinase type-1 family.
     
 0.494
RAM_09390
COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.473
RAM_09420
Melibiase.
       0.427
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.