STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_09405COG1653 ABC-type sugar transport system, periplasmic component. (420 aa)    
Predicted Functional Partners:
RAM_09410
COG1175 ABC-type sugar transport systems, permease components.
 
 0.996
RAM_09415
COG0395 ABC-type sugar transport system, permease component.
 
 
 0.960
RAM_43170
COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.865
RAM_43175
COG0395 ABC-type sugar transport system, permease component.
 
 
 0.839
RAM_16000
COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.729
RAM_09400
COG1940 Transcriptional regulator/sugar kinase.
  
    0.720
CebF
COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.685
RAM_27360
COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.672
CebG-2
COG0395 ABC-type sugar transport system, permease component.
 
 
 0.668
RAM_12425
COG0395 ABC-type sugar transport system, permease component.
 
 
 0.654
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.