STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_09420Melibiase. (384 aa)    
Predicted Functional Partners:
RAM_40200
Glycoside hydrolase; COG5434 Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.693
RAM_21480
exo-poly-alpha-D-galacturonosidase precursor; COG5434 Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.686
RAM_23510
Hypothetical protein.
 
   
 0.680
RAM_20310
Large protein.
 
     0.667
LacZ-7
COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
     0.665
RAM_38090
Glycoside hydrolase; COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
     0.612
LacZ
COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
     0.609
RAM_17360
COG3533 Uncharacterized protein conserved in bacteria.
 
     0.587
RAM_07770
Glycoside hydrolase; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.564
AbfA-9
alpha-N-arabinofuranosidase; COG3534 Alpha-L-arabinofuranosidase.
 
  
 0.514
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.