STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PcaD3-oxoadipate enol-lactonase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). (260 aa)    
Predicted Functional Partners:
PcaC-2
COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
 
 0.995
PcaH
COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
   
 0.929
PcaG
COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
   
 0.925
PcaR
COG1414 Transcriptional regulator.
 
     0.810
GctB
COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
 
  
 0.809
GctA
COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
 
  
 0.808
FadA
COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
    0.759
PcaC-4
COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
 
 
  0.723
PcaC-3
COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
  
 
  0.655
RAM_26400
COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
  
 
  0.655
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.