STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PcaRCOG1414 Transcriptional regulator. (277 aa)    
Predicted Functional Partners:
PcaH
COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
  
 0.870
PcaG
COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
  
 0.864
GctA
COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
 
  
 0.828
GctB
COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
 
  
 0.827
PcaC-2
COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
 
   
 0.814
PcaD
3-oxoadipate enol-lactonase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
     0.808
FadA
COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.782
RAM_13390
UreA amidolyase; COG0439 Biotin carboxylase.
  
  
 0.774
RAM_40340
COG1414 Transcriptional regulator.
  
     0.766
RAM_08745
COG1414 Transcriptional regulator.
  
     0.739
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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