STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_09470COG0714 MoxR-like ATPases. (289 aa)    
Predicted Functional Partners:
RAM_09480
COG3552 Protein containing von Willebrand factor type A (vWA) domain.
 
   
 0.801
RAM_09465
Hypothetical protein; COG2068 Uncharacterized MobA-related protein.
 
     0.786
RAM_09495
COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
 
   
 0.754
RAM_15260
COG3552 Protein containing von Willebrand factor type A (vWA) domain.
 
  
 0.749
CutM-2
COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs.
 
   
 0.717
CutM
COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs.
 
   
 0.703
CutL
COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
 
   
 0.685
RAM_09505
Carbon monoxide dehydrogenase subunit G.
 
   
 0.650
RAM_09475
Hypothetical protein; COG0112 Glycine/serine hydroxymethyltransferase.
  
    0.625
PcaR
COG1414 Transcriptional regulator.
  
    0.532
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.