STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_09475Hypothetical protein; COG0112 Glycine/serine hydroxymethyltransferase. (589 aa)    
Predicted Functional Partners:
RAM_13620
Hypothetical protein.
 
  
 0.625
RAM_01145
Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; Belongs to the UbiA prenyltransferase family.
 
  
 0.624
RAM_09470
COG0714 MoxR-like ATPases.
  
    0.624
RAM_14555
Hypothetical protein.
 
   
 0.614
RAM_01175
COG1216 Predicted glycosyltransferases.
 
  
 0.601
RAM_09465
Hypothetical protein; COG2068 Uncharacterized MobA-related protein.
       0.576
RAM_22355
Hypothetical protein; COG1280 Putative threonine efflux protein.
  
     0.563
RAM_25360
COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.539
RAM_20850
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.537
RAM_41645
Hypothetical protein.
  
     0.527
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.