STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PhoAAlkaline phosphatase; COG3291 FOG: PKD repeat. (518 aa)    
Predicted Functional Partners:
RAM_09540
Hypothetical protein; COG0823 Periplasmic component of the Tol biopolymer transport system.
 
   
 0.916
RAM_09535
COG0477 Permeases of the major facilitator superfamily.
 
   
 0.882
RAM_07605
Licheninase; COG3405 Endoglucanase Y.
 
     0.688
RAM_22370
Hypothetical protein.
 
 
 0.649
RAM_30490
Hypothetical protein; COG0823 Periplasmic component of the Tol biopolymer transport system.
 
   
 0.598
RAM_30740
Hypothetical protein.
  
     0.573
RAM_30735
Hypothetical protein.
  
     0.541
AlgL
Lyase precursor.
 
  
 0.534
RAM_01400
COG3325 Chitinase.
 
 
 
 0.519
RAM_21250
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
   
 0.515
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.