STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_09540Hypothetical protein; COG0823 Periplasmic component of the Tol biopolymer transport system. (317 aa)    
Predicted Functional Partners:
RAM_09535
COG0477 Permeases of the major facilitator superfamily.
 
     0.949
PhoA
Alkaline phosphatase; COG3291 FOG: PKD repeat.
 
   
 0.916
RAM_30485
COG0477 Permeases of the major facilitator superfamily.
 
     0.786
RAM_30325
Hypothetical protein.
  
     0.616
RAM_05275
COG3227 Zinc metalloprotease (elastase).
 
     0.469
RAM_05285
Zinc metalloprotease; Extracellular zinc metalloprotease.
  
     0.465
RAM_30400
COG3227 Zinc metalloprotease (elastase).
  
     0.455
RAM_21250
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.412
RAM_09525
COG1309 Transcriptional regulator.
       0.406
RAM_30290
Flavoprotein; COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase.
  
     0.404
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.