STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_09700COG0087 Ribosomal protein L3. (395 aa)    
Predicted Functional Partners:
AceB-2
COG2225 Malate synthase; Belongs to the malate synthase family.
 
   
 0.837
AllB
L-hydantoinase/allantoinase; COG0044 Dihydroorotase and related cyclic amidohydrolases.
 
    0.824
RAM_09770
Urate oxidase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
 
     0.812
RAM_09780
OHCU decarboxylase; COG3195 Uncharacterized protein conserved in bacteria.
 
     0.812
RAM_09775
COG2351 Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
     0.773
alc
COG4266 Allantoicase; Belongs to the allantoicase family.
 
     0.709
RAM_09690
COG1414 Transcriptional regulator.
 
    0.622
FucA
L-fuculose-phosphate aldolase; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
   
    0.519
AraD
COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
   
    0.519
RAM_37220
Aldolase II superfamily protein; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
   
    0.519
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.