STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MarR-3COG1846 Transcriptional regulators. (162 aa)    
Predicted Functional Partners:
RAM_09730
PucR family transcriptional regulator; COG2508 Regulator of polyketide synthase expression.
 
    0.628
RAM_17025
Hypothetical protein.
  
     0.628
RAM_28050
Hypothetical protein; COG3631 Ketosteroid isomerase-related protein.
  
     0.575
RAM_29555
Hypothetical protein; COG3631 Ketosteroid isomerase-related protein.
  
     0.572
RAM_09750
COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
 
     0.479
RAM_23725
Hypothetical protein; COG3467 Predicted flavin-nucleotide-binding protein.
  
     0.442
RAM_29785
CRISPR-associated protein CSE2.
  
     0.439
RAM_29565
Thioredoxin; COG3531 Predicted protein-disulfide isomerase.
  
     0.436
RAM_08390
Hypothetical protein.
  
     0.421
RAM_37925
COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
  
     0.405
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.