STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_09730PucR family transcriptional regulator; COG2508 Regulator of polyketide synthase expression. (440 aa)    
Predicted Functional Partners:
RAM_09750
COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
 
     0.667
RAM_09735
COG4630 Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A.
 
     0.648
MarR-3
COG1846 Transcriptional regulators.
 
    0.628
PucR-3
PucR family transcriptional regulator; COG2508 Regulator of polyketide synthase expression.
 
     0.628
CoxS-2
COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs.
       0.559
RAM_09745
Hydroxydechloroatrazine ethylaminohydrolase; COG0402 Cytosine deaminase and related metal-dependent hydrolases.
       0.551
RAM_13750
SGNH hydrolase; COG2755 Lysophospholipase L1 and related esterases.
  
     0.474
RAM_47335
COG3255 Putative sterol carrier protein.
  
     0.464
RAM_11030
Hypothetical protein.
  
     0.454
RAM_47730
Hypothetical protein.
  
     0.454
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.