STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_09865Hypothetical protein. (219 aa)    
Predicted Functional Partners:
RAM_09870
COG1309 Transcriptional regulator.
 
     0.877
RAM_09860
FAD-dependent oxidoreductase; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
       0.773
RAM_21240
Hypothetical protein; COG0613 Predicted metal-dependent phosphoesterases (PHP family).
  
     0.575
RAM_31750
Hypothetical protein.
  
     0.521
RAM_09875
GGDEF domain-containing diguanylate cyclase; COG2199 FOG: GGDEF domain.
       0.511
RAM_35570
COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
 
     0.495
RAM_13515
Hypothetical protein.
  
     0.482
RAM_23170
Hypothetical protein.
  
     0.478
RAM_25055
Hypothetical protein.
  
     0.431
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.