STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
RAM_09915Amidohydrolase; COG1228 Imidazolonepropionase and related amidohydrolases. (358 aa)    
Predicted Functional Partners:
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
       0.794
RAM_04595
Amidohydrolase; COG1228 Imidazolonepropionase and related amidohydrolases.
  
     0.694
RAM_11195
Signal transduction protein; COG0784 FOG: CheY-like receiver.
  
     0.641
RAM_09920
Integral membrane protein; COG1266 Predicted metal-dependent membrane protease.
       0.635
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.565
RAM_43440
Amidohydrolase; COG1228 Imidazolonepropionase and related amidohydrolases.
  
     0.543
RAM_27240
Organophosphate acid anhydrase; COG1228 Imidazolonepropionase and related amidohydrolases.
  
     0.531
RAM_25105
Amidohydrolase; COG1820 N-acetylglucosamine-6-phosphate deacetylase.
  
     0.519
RAM_09905
COG1132 ABC-type multidrug transport system, ATPase and permease components.
       0.494
RAM_09900
COG1846 Transcriptional regulators.
       0.493
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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