STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10065Iron ABC transporter periplasmic protein; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component. (265 aa)    
Predicted Functional Partners:
RAM_10060
Iron ABC transporter ATPase; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
 
 
 0.942
RAM_25645
COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
 
 
 0.910
RAM_10050
Iron ABC transporter permease; COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.892
RAM_10055
Iron ABC transporter permease; COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.880
RAM_25635
Iron ABC transporter permease; COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.869
RAM_33510
Iron ABC transporter ATPase; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
 
 
 0.842
RAM_25640
COG4779 ABC-type enterobactin transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.783
RAM_33515
Iron ABC transporter permease; COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.770
AceE
COG2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component.
       0.479
RAM_34765
COG1846 Transcriptional regulators.
  
   
 0.453
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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