STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10105Creatinine amidohydrolase; COG1402 Uncharacterized protein, putative amidase. (263 aa)    
Predicted Functional Partners:
CodA
COG0402 Cytosine deaminase and related metal-dependent hydrolases.
 
  
  0.991
RAM_10110
COG0277 FAD/FMN-containing dehydrogenases.
 
     0.943
RAM_10115
Hypothetical protein.
 
     0.935
RAM_35740
Creatinine amidohydrolase; COG1402 Uncharacterized protein, putative amidase.
  
  
 
0.927
RAM_42860
Creatinine amidohydrolase; COG1402 Uncharacterized protein, putative amidase.
  
  
 
0.923
CodA-2
COG0590 Cytosine/adenosine deaminases.
     
  0.900
RAM_32010
Glycine amidinotransferase; COG1834 N-Dimethylarginine dimethylaminohydrolase.
     
  0.900
SsuB-3
COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
 
     0.850
SsuC-3
COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
     0.842
RAM_10145
Hydroxyatrazine ethylaminohydrolase; COG0402 Cytosine deaminase and related metal-dependent hydrolases.
 
     0.808
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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