STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10110COG0277 FAD/FMN-containing dehydrogenases. (444 aa)    
Predicted Functional Partners:
RAM_10115
Hypothetical protein.
 
     0.946
RAM_10105
Creatinine amidohydrolase; COG1402 Uncharacterized protein, putative amidase.
 
     0.943
CodA
COG0402 Cytosine deaminase and related metal-dependent hydrolases.
 
    0.921
SsuB-3
COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
 
     0.892
SsuC-3
COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
     0.886
RAM_10145
Hydroxyatrazine ethylaminohydrolase; COG0402 Cytosine deaminase and related metal-dependent hydrolases.
 
    0.858
RAM_10135
COG1396 Predicted transcriptional regulators.
 
     0.715
RAM_10140
Phthalate 4,5-dioxygenase reductase subunit; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
     0.597
NuoF-2
COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
   
 0.504
RAM_35740
Creatinine amidohydrolase; COG1402 Uncharacterized protein, putative amidase.
 
     0.441
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.