STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10115Hypothetical protein. (396 aa)    
Predicted Functional Partners:
RAM_10110
COG0277 FAD/FMN-containing dehydrogenases.
 
     0.947
CodA
COG0402 Cytosine deaminase and related metal-dependent hydrolases.
 
     0.944
SsuC-3
COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
  
 0.943
SsuB-3
COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
 
  
 0.936
RAM_10105
Creatinine amidohydrolase; COG1402 Uncharacterized protein, putative amidase.
 
     0.935
RAM_10145
Hydroxyatrazine ethylaminohydrolase; COG0402 Cytosine deaminase and related metal-dependent hydrolases.
 
     0.863
RAM_10135
COG1396 Predicted transcriptional regulators.
 
    0.730
RAM_10140
Phthalate 4,5-dioxygenase reductase subunit; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
     0.557
RAM_11490
COG1309 Transcriptional regulator.
  
     0.463
RAM_06600
FMN reductase; COG0431 Predicted flavoprotein.
 
    0.420
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.