STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10220Peptidase M48; COG0501 Zn-dependent protease with chaperone function. (292 aa)    
Predicted Functional Partners:
RAM_25545
Glycosyl transferase.
  
     0.685
RAM_25550
LPXTG-motif cell wall anchor domain protein.
  
     0.685
SlyA-4
COG1846 Transcriptional regulators.
  
     0.677
RAM_23875
Hypothetical protein.
   
 
 0.619
RAM_19345
LamG domain-containing protein receptor.
  
   
 0.615
RAM_30870
Hypothetical protein.
 
   
 0.612
RAM_40925
Hypothetical protein.
 
     0.582
RAM_42180
Integral membrane protein.
  
     0.561
RAM_22800
Hypothetical protein.
  
     0.559
RAM_39465
Hypothetical protein.
  
     0.529
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.