STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10230COG1476 Predicted transcriptional regulators. (74 aa)    
Predicted Functional Partners:
RAM_10235
Hypothetical protein.
 
     0.915
RAM_10225
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
 
     0.813
RAM_36260
COG1476 Predicted transcriptional regulators.
  
     0.769
RAM_10240
COG3795 Uncharacterized protein conserved in bacteria.
       0.539
RpoE-15
COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain; Belongs to the sigma-70 factor family.
       0.539
RAM_02295
Hypothetical protein.
   
 
 0.443
RAM_08255
COG2360 Leu/Phe-tRNA-protein transferase.
   
 
 0.443
RAM_11870
Hypothetical protein.
   
 
 0.443
RAM_19820
Hypothetical protein.
   
 
 0.443
RAM_34435
Hypothetical protein; COG1960 Acyl-CoA dehydrogenases.
   
 
 0.443
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.