STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ArsC-2COG1393 Arsenate reductase and related proteins, glutaredoxin family; Belongs to the ArsC family. (117 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.694
PaaG-4
COG1024 Enoyl-CoA hydratase/carnithine racemase.
       0.574
RAM_10255
Hypothetical protein; COG1309 Transcriptional regulator.
       0.565
Fpr-2
ferredoxin--NADP+ reductase; COG1146 Ferredoxin.
     
 0.483
RAM_03870
COG0798 Arsenite efflux pump ACR3 and related permeases.
     
 0.476
RAM_05970
Arsenical pump membrane protein; COG1055 Na+/H+ antiporter NhaD and related arsenite permeases.
     
 0.462
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
       0.443
RAM_02960
Hypothetical protein.
  
  
 0.400
RAM_42025
Purine phosphorylase family 1; COG0775 Nucleoside phosphorylase.
  
  
 0.400
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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