STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10375Acetyltransferase; COG3393 Predicted acetyltransferase. (284 aa)    
Predicted Functional Partners:
RAM_10745
Hypothetical protein.
  
     0.745
RAM_08470
vitamin-B12 independent methionine synthase.
  
     0.692
arc
COG0464 ATPases of the AAA+ class.
  
    0.646
RAM_10380
Penicillin-binding protein, transpeptidase; COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
     0.633
RAM_41190
Hypothetical protein.
  
     0.630
map-2
Methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.624
RAM_05105
Hypothetical protein; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
     0.582
RAM_11195
Signal transduction protein; COG0784 FOG: CheY-like receiver.
  
    0.582
RAM_43975
Hypothetical protein.
  
     0.565
RAM_27160
Hypothetical protein.
  
     0.559
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.