STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10400Hypothetical protein. (280 aa)    
Predicted Functional Partners:
RAM_10405
Hypothetical protein.
 
     0.915
RAM_32340
Hypothetical protein.
 
     0.745
RAM_10395
COG1131 ABC-type multidrug transport system, ATPase component.
       0.701
RAM_10390
COG0842 ABC-type multidrug transport system, permease component.
       0.698
RAM_06705
Hypothetical protein.
 
  
 0.495
RAM_19380
SARP family transcriptional regulator.
  
     0.482
RAM_04020
Two-component system sensor kinase; COG1983 Putative stress-responsive transcriptional regulator.
 
  
 0.466
RAM_10410
COG2186 Transcriptional regulators.
  
    0.453
RAM_39025
Serine/threonine phosphatase fused with REC signal receiver domain; COG0784 FOG: CheY-like receiver.
  
     0.438
RAM_19875
Integral membrane protein; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
 
     0.420
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.