STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10460Oxidoreductase; COG1233 Phytoene dehydrogenase and related proteins. (512 aa)    
Predicted Functional Partners:
CrtB
COG1562 Phytoene/squalene synthetase.
  
  
 0.666
CrtB-2
COG1562 Phytoene/squalene synthetase.
  
  
 0.666
RAM_10480
Hypothetical protein; COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase).
     
 0.476
RAM_10465
Hypothetical protein.
       0.459
RAM_10470
Hypothetical protein.
       0.459
RAM_10475
Hypothetical protein.
       0.459
ChlD
COG1239 Mg-chelatase subunit ChlI.
  
  
 0.454
RAM_42905
COG3662 Uncharacterized protein conserved in bacteria.
      
 0.446
RAM_10455
RIO kinase 1; COG1718 Serine/threonine protein kinase involved in cell cycle control.
       0.420
RAM_11830
COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
  
 0.400
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.