STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10505COG3022 Uncharacterized protein conserved in bacteria; Belongs to the UPF0246 family. (248 aa)    
Predicted Functional Partners:
RAM_10415
MFS transporter CP family, cyanate transporter; COG2807 Cyanate permease.
  
    0.704
RAM_17755
MFS transporter CP family, cyanate transporter; COG2807 Cyanate permease.
  
    0.704
RAM_10510
COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
 
     0.606
RAM_43475
Hypothetical protein.
  
     0.537
RAM_36280
COG1985 Pyrimidine reductase, riboflavin biosynthesis.
       0.480
RAM_07990
Chromosome segregation-related protein.
  
    0.455
RAM_11140
Hypothetical protein.
  
     0.436
RAM_31055
Hypothetical protein; COG0146 N-methylhydantoinase B/acetone carboxylase, alpha subunit.
  
     0.418
RAM_06055
COG0557 Exoribonuclease R.
 
     0.407
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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