STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10575COG3209 Rhs family protein. (1059 aa)    
Predicted Functional Partners:
RAM_10570
Hypothetical protein.
       0.773
RAM_10565
Hypothetical protein.
       0.671
RAM_43180
Hypothetical protein.
  
     0.510
RAM_10560
Hypothetical protein.
 
     0.493
RAM_44425
COG3209 Rhs family protein.
  
     0.471
RAM_25705
Chitinase; COG3979 Uncharacterized protein contain chitin-binding domain type 3.
 
 
 0.453
RAM_22800
Hypothetical protein.
  
     0.450
RAM_10580
Haloacid dehalogenase; COG0546 Predicted phosphatases.
       0.421
RAM_18460
Hypothetical protein; COG0439 Biotin carboxylase.
  
     0.421
RAM_05945
COG1605 Chorismate mutase.
  
     0.409
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.