STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10605Hypothetical protein. (66 aa)    
Predicted Functional Partners:
RAM_10615
COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
     0.854
RAM_10610
COG3239 Fatty acid desaturase.
 
     0.826
RAM_10620
COG1309 Transcriptional regulator.
 
     0.708
RAM_44475
Hypothetical protein.
  
     0.647
RAM_40940
Hypothetical protein.
  
     0.625
RAM_06470
Hypothetical protein.
  
     0.560
RAM_10600
COG4585 Signal transduction histidine kinase.
       0.460
RAM_10595
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
       0.446
RAM_08555
Hypothetical protein.
  
     0.441
RAM_42395
Lysozyme M1 precursor; COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
  
     0.432
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.