STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10620COG1309 Transcriptional regulator. (219 aa)    
Predicted Functional Partners:
RAM_10610
COG3239 Fatty acid desaturase.
 
    0.841
RAM_10615
COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
  
 0.804
RAM_10605
Hypothetical protein.
 
     0.708
RAM_06470
Hypothetical protein.
 
     0.680
RAM_40410
Hypothetical protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins; Belongs to the long-chain O-acyltransferase family.
  
     0.663
RAM_40940
Hypothetical protein.
  
     0.578
RAM_44145
COG4399 Uncharacterized protein conserved in bacteria.
  
     0.527
RAM_09280
Short chain dehydrogenase; COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes.
 
     0.517
PntA
COG3288 NAD/NADP transhydrogenase alpha subunit.
       0.504
PntA-2
COG3288 NAD/NADP transhydrogenase alpha subunit.
       0.504
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.