STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10765Hypothetical protein. (118 aa)    
Predicted Functional Partners:
RAM_10775
Hypothetical protein; COG2368 Aromatic ring hydroxylase.
       0.618
YhdJ
Adenine-specific DNA-methyltransferase; COG0863 DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.
       0.594
RAM_10760
COG1961 Site-specific recombinases, DNA invertase Pin homologs.
       0.455
RAM_10780
TraG/VirD4-like conjugation protein involved in type IV secretion; COG1643 HrpA-like helicases.
       0.431
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.