STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YhdJAdenine-specific DNA-methyltransferase; COG0863 DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family. (345 aa)    
Predicted Functional Partners:
RAM_10775
Hypothetical protein; COG2368 Aromatic ring hydroxylase.
 
     0.947
RAM_10780
TraG/VirD4-like conjugation protein involved in type IV secretion; COG1643 HrpA-like helicases.
 
     0.760
RAM_36365
Site-specific DNA-methyltransferase.
  
     0.736
RAM_10765
Hypothetical protein.
       0.600
RAM_10755
Recombinase; COG1961 Site-specific recombinases, DNA invertase Pin homologs.
 
  
 0.537
RAM_17945
Hypothetical protein.
 
     0.535
RAM_20040
Hypothetical protein; COG3664 Beta-xylosidase.
  
     0.439
RAM_43480
Hypothetical protein.
  
     0.433
RAM_40260
Endoglucanase.
 
     0.425
RAM_07120
Carbohydrate-binding protein; COG2730 Endoglucanase.
 
     0.418
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.