STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10780TraG/VirD4-like conjugation protein involved in type IV secretion; COG1643 HrpA-like helicases. (720 aa)    
Predicted Functional Partners:
RAM_10775
Hypothetical protein; COG2368 Aromatic ring hydroxylase.
 
     0.883
YhdJ
Adenine-specific DNA-methyltransferase; COG0863 DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.
 
     0.760
RAM_10755
Recombinase; COG1961 Site-specific recombinases, DNA invertase Pin homologs.
 
    0.576
RAM_19345
LamG domain-containing protein receptor.
 
 
 
 0.555
RAM_17355
Ricin-type beta-trefoil lectin domain-containing protein.
  
     0.537
RAM_20040
Hypothetical protein; COG3664 Beta-xylosidase.
 
   
 0.513
RAM_44985
COG1403 Restriction endonuclease.
 
 
 
 0.500
RAM_22055
Hypothetical protein.
  
   
 0.495
RAM_10895
Hypothetical protein.
 
    0.444
RAM_10765
Hypothetical protein.
       0.436
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.