STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10830COG5640 Secreted trypsin-like serine protease. (269 aa)    
Predicted Functional Partners:
RAM_10435
COG5640 Secreted trypsin-like serine protease.
  
   
 0.775
RAM_13015
COG5640 Secreted trypsin-like serine protease.
  
     0.725
RAM_00290
Esterase; COG5640 Secreted trypsin-like serine protease.
  
   
 0.722
RAM_16960
Esterase.
  
   
 0.666
RAM_00295
Esterase; COG5640 Secreted trypsin-like serine protease.
  
   
 0.628
RAM_10820
Hypothetical protein.
       0.561
RAM_10825
Hypothetical protein.
       0.561
RAM_10835
Hypothetical protein; COG0481 Membrane GTPase LepA.
       0.554
RAM_10840
Hypothetical protein.
       0.554
RAM_10845
Hypothetical protein.
       0.554
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.