STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10895Hypothetical protein. (160 aa)    
Predicted Functional Partners:
SmvA
COG0477 Permeases of the major facilitator superfamily.
  
    0.776
RAM_10775
Hypothetical protein; COG2368 Aromatic ring hydroxylase.
 
     0.667
RAM_28900
Hypothetical protein.
 
   
 0.516
RAM_14890
Hypothetical protein.
  
     0.515
RAM_10905
Hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
       0.513
RAM_28910
Hypothetical protein; COG0226 ABC-type phosphate transport system, periplasmic component.
  
     0.478
RAM_45780
Two-component system sensor kinase; COG0642 Signal transduction histidine kinase.
  
     0.478
RAM_10780
TraG/VirD4-like conjugation protein involved in type IV secretion; COG1643 HrpA-like helicases.
 
    0.444
RAM_07780
COG3669 Alpha-L-fucosidase.
  
     0.422
RAM_32925
COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1B family.
  
     0.413
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.