STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10910COG1846 Transcriptional regulators. (154 aa)    
Predicted Functional Partners:
RAM_10905
Hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
     0.717
RAM_41850
Methylamine utilization protein MauE.
 
  
 0.542
RAM_33625
Hypothetical protein.
  
     0.498
RAM_00780
MFS transporter multidrug efflux transporter; COG0477 Permeases of the major facilitator superfamily.
 
     0.466
RAM_20090
Hypothetical protein.
 
  
 0.461
RAM_13830
Hypothetical protein; COG1073 Hydrolases of the alpha/beta superfamily.
  
     0.452
Hmd-9
COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
  
     0.447
RAM_00705
COG1309 Transcriptional regulator.
  
    0.446
RAM_41845
TlpA-like family protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
 
  
 0.431
RAM_20865
Hypothetical protein.
  
     0.424
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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