STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10920COG1960 Acyl-CoA dehydrogenases. (378 aa)    
Predicted Functional Partners:
FadB-3
3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.966
PaaG
COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.948
PaaG-3
COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.940
RAM_15970
Phosphotransferase; COG3173 Predicted aminoglycoside phosphotransferase.
 
   0.832
FixA
COG2086 Electron transfer flavoprotein, beta subunit.
 
 
 0.795
FixB
COG2025 Electron transfer flavoprotein, alpha subunit.
 
 
 0.794
RAM_10925
Oxidoreductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
  0.700
RAM_13365
3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.683
PaaH-2
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.583
PaaH-5
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.583
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.