STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IscS-2Aminotransferase class V/cysteine desulfurase; COG0520 Selenocysteine lyase. (386 aa)    
Predicted Functional Partners:
SufS
Cysteine desulfurase/selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
  
 
0.920
TrxB
Thioredoxin reductase; COG0784 FOG: CheY-like receiver.
  
 
 0.910
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
    
 0.908
TrxB-4
COG0492 Thioredoxin reductase.
  
 
 0.908
MetB
COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases.
    
 0.905
MetB-3
COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases.
    
 0.905
NifU
Nitrogen fixation protein NifU; COG0822 NifU homolog involved in Fe-S cluster formation.
 
 
 0.882
SufC
COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
 
  
 0.752
SufB
COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
 0.738
SufD
COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
 0.716
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.